Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs66489362 | chr6:141759072 | TA/T | 0.000104 | 485 | 23.67 | 16.35 | 15.65 | KM Plot |
| THCA | rs66496446 | chr16:20726035 | C/T | 3.4E-5 | 489 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs66516314 | chr2:29052826 | G/A | 0.000119 | 488 | 14.98 | 17.93 | 15.33 | KM Plot |
| THCA | rs66519969 | chr1:156910892 | GCTCGTCTT/G | 5.16E-7 | 489 | 16.73 | 14.87 | 11.3 | KM Plot |
| THCA | rs66559323 | chr2:65130533 | C/T | 4.03E-11 | 478 | 15 | 20.75 | 15.17 | KM Plot |
| THCA | rs6659978 | chr1:40302797 | T/C | 0.000268 | 489 | 15.9 | 16.3 | 14.3 | KM Plot |
| THCA | rs66610327 | chr3:127633860 | AC/A | 0 | 487 | 16.33 | 14.97 | 6.03 | KM Plot |
| THCA | rs6661161 | chr1:22373671 | T/C | 5.07E-8 | 483 | 15.17 | 17.88 | 6.57 | KM Plot |
| THCA | rs66622580 | chr6:79439424 | A/T | 4.35E-6 | 487 | 16.07 | 15.93 | 17.15 | KM Plot |
| THCA | rs66647715 | chr16:20773562 | C/T | 3.38E-5 | 490 | 16.37 | 14.63 | 17.65 | KM Plot |
| THCA | rs6664869 | chr1:45979238 | G/T | 4.71E-5 | 489 | 10.6 | 16.18 | 16.97 | KM Plot |
| THCA | rs6666156 | chr1:26910959 | C/T | 3.59E-6 | 481 | 16.02 | 15.83 | 15.17 | KM Plot |
| THCA | rs6666575 | chr1:48612578 | C/T | 7.35E-5 | 466 | 16.97 | 14.47 | 9.77 | KM Plot |
| THCA | rs6667191 | chr1:45982844 | A/G | 4.23E-5 | 487 | 10.4 | 16.18 | 16.92 | KM Plot |
| THCA | rs66684864 | chr4:3182849 | T/G | 0.000188 | 490 | 16.83 | 13.97 | 15.23 | KM Plot |